Software

  • GroupSpAM
    Matlab code for fitting the group sparse additive models.

  • MMTM
    A C++ package for the mixed-membership triangular model. The approximate inference is based on collapsed Gibbs sampling.

  • Overpaint
    A C++ package that jointly estimates crossover rates, gene conversion rates and mean conversion tract lengths from population SNP dataset.

  • Mtreemix
    A C package that estimates mixture models of mutagenetic trees from observed cross-sectional data.