Overpaint

Description

Overpaint is a C++ package that can jointly estimate crossover rates, gene conversion rates and mean conversion tract lengths from population SNP dataset.

Download

Overpaint is distributed under the GNU General Public License. Download release 0.2.

Installation

• Overpaint has been tested under MAC OS X.

• Instructions for installation are in the README file.

• To compile the source code, gsl needs to be installed.

References

• J. Yin, M. I. Jordan, Y. S. Song.
  Joint estimation of gene conversion rates and mean conversion tract lengths from population SNP data.
  Bioinformatics, Vol. 25, i231-i239, 2009.

• J. Yin.
  Hypothesis testing of meiotic recombination rates from population genetic data.
  BMC Genetics, 15:122, 2014.

Contact

If you have any questions, please contact Yun S. Song or Junming Yin.